Scaffold Ga0315277_10024224

Overview

Basic Information

• Taxon OID: 3300032118
• Scaffold ID: Ga0315277_10024224
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7326
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3566
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F008615	Metagenome / Metatranscriptome	330	N
F016114	Metagenome / Metatranscriptome	249	Y
F025444	Metagenome	201	N
F026828	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315277_1002422410	F025444	N/A	MYLQLAGLEPLDTAENPLAPGAATYKYKNYYLGQGQDIILPDALFPPNVEGYAAALKSVADLYGKFSKGKKTPAAVVQTPGMGVDPATLMLIAKGIYAGVQALSVVFRGQVTTAARQRITELYNGNNFNVQNLNRMTAKQISDAITQIDNQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTALPGWVLPAALGLGAVLILRGRK
Ga0315277_1002422413	F016114	GGA	MIIKDWQAAFFDSRDVETINEMAAMARRMLISQRELQRDELLRLKMKYPHLTTKD
Ga0315277_1002422415	F008615	N/A	MNTPNTFGAKMFGRFISKGWHISFTDSYQDRVCVIPPERLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT
Ga0315277_1002422417	F026828	N/A	MITEELIANAIAFLAGWILKRPDFVQKILSKLFTKKHK
Ga0315277_100242245	F000710	N/A	MATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLLLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0315277_100242246	F006697	N/A	MANQVQKLSYVDNKLGVSLPGQQTTRVIYDSVNAVAAQGFFEFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIIGAFGGSPTPATLANHMNLNILVGNQVVVKDFDPSFNATNRGLAFDRLHSGANLADNIEIRLLTEIVIPPQVNFKATLQLADGANIALNDDITIVFKGYGRIFSAGNSF
Ga0315277_100242247	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHIFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPLSETGVTYQGLNGASVKFDLVIGNKTVIKDATVEFGGEQAFYNDGATASSVIDLEGVGILIPPQVEYYVVAKGFGTGARAAASVRLGCYLFGTGALLNFNTTI