Scaffold Ga0315277_10000004

Overview

Basic Information

• Taxon OID: 3300032118
• Scaffold ID: Ga0315277_10000004
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 446844
• Total Scaffold Genes: 473
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 337 (71.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3566
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003098	Metagenome / Metatranscriptome	507	Y
F007209	Metagenome	355	Y
F043801	Metagenome / Metatranscriptome	155	Y
F058600	Metagenome	134	Y
F102445	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315277_10000004113	F043801	N/A	MEVIELAKKLMGECPCGFSFITPHGEDDAATMLQYHIERIHKKEYPQGVPKSEALKHVKEVK
Ga0315277_10000004433	F003098	GAG	MAKSIEFVFQFPPIQGVFDTGYGIVYIFGTLHEIEIEDIIAHETLHYVLQKVAGKRTSLKLDRIYNRVESD
Ga0315277_1000000462	F007209	AGGCGG	MLRFRYALTTDGERRCANNEFYLQKTPKYRGYTEKIFKALYDSDPKTIAEISYRTGIDRRAVNGVITFNVMAGYIRRISLSL
Ga0315277_1000000489	F102445	AGG	MANIRHAFFKMNLRQLLFAALMGSLAFAVRNAGFYIIVSYPFRFDPRWVFSLLAACWAGPGGGLIAGTLAAIKFDKFVQADLAAIPAHFFVGLFARLLIQRKINSVYACFLWPLLGVPLYWLATLFFTPAMATITLVPVLAFIGISSALLTFVVGLAVEKRANNLLSFLRI
Ga0315277_1000000495	F058600	AGGA	LDRIDKVLLILPFLPVADLLSTLFSLSLGGQEVGILARPILEHYGSTGLVFLATFASAIFLFFMEVVIYIKKMFINEFRFKWMWYVLAVPIFWFFVLEGVYVSTVVMNVLAPFSPLLTQASLLRVIIAGGYFAGVVALTVSQMKRLPRF