NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316218_1115060

Scaffold Ga0316218_1115060


Overview

Basic Information
Taxon OID3300032117 Open in IMG/M
Scaffold IDGa0316218_1115060 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1038
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055365Metagenome138N
F066377Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0316218_11150601F055365N/AQAITAYPGAVDGDGAMTTTSLGLMSAIASILVGHVNKVSHKNPHGITLADLGLSITYDFVANNGYIKFTMGSSSFMIQWGTGITGNSAPGTYFSFSPQFPNNCFGVYGTAVCTEGFDSAAFVLTGVSTGAPSTSGFYAYNSSPGSRIVYWIAIGN
Ga0316218_11150602F066377GGAGMPPIGIQTFYYGKKLPARAIAIAQVTAEDVSPADLIDIVNTPYLPGSLGIWTLTSGLAASPNFTAPDYNQSVTITGDIAYLVQNQFFQITSQFAADGVTPLYFYHNFGQSVSGATILNLDGSVLTPAPTVLFNGNYMYHDVSSTAPCQVRYVDSAGRVQVSLLHYNQVMPLSTNGDTSKGYAFT
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