Scaffold Ga0315903_10310345

Overview

Basic Information

• Taxon OID: 3300032116
• Scaffold ID: Ga0315903_10310345
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1327
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F017469	Metagenome / Metatranscriptome	240	Y
F024719	Metagenome / Metatranscriptome	204	Y
F026822	Metagenome	196	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315903_103103451	F006842	AGGAGG	MKATPAICGDHLVPISECDCLSYMKEIANSAERLIQLAKEREELSK
Ga0315903_103103452	F069714	AGGAG	MPEYTKAITFECEGEEYLAEVYVGKNCSDYNLYQGNKKLEDKPAWLERAELNPEFSFLFFIDELAWEYEAGNSWEVKI
Ga0315903_103103453	F017469	GGAGG	MKTICQFCGWEVNKPEWYNKQYDRSGYVCDNCLMDNATEREKEKVR
Ga0315903_103103455	F026822	AGG	MSEPRYLEGDEYALTGTELDIVKCKECASEYDYAEYHSYTCSDCEDKMIKRERERVSG
Ga0315903_103103456	F024719	N/A	VGEVIELPNRGKIVVILYEVSDTQGIAIWGGENPVEALKWYRNSPTGSKIWVSQWEADEEDAKQVLEPMEITPIVLATITDCMERWGNGKS