NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315903_10156413

Scaffold Ga0315903_10156413


Overview

Basic Information
Taxon OID3300032116 Open in IMG/M
Scaffold IDGa0315903_10156413 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2085
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007260Metagenome / Metatranscriptome354N
F010835Metagenome / Metatranscriptome298N
F013879Metagenome / Metatranscriptome267N

Sequences

Protein IDFamilyRBSSequence
Ga0315903_101564131F007260N/AHSCFWCLLQSVNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVIAGGFQDNVQARILVKFSDWRLADSTLVTVDAAVWSCDVGFTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLVTYDGRQMRIMSAKRDGSGAYYALELGAKTK
Ga0315903_101564132F013879GGAGMTPLIVVDVSRFSEAWKQYLRLTSRALPEVINARTFYMMLRMYCLLPPKSPQSARNKVLDYLDRYVLKLRKKSRKTGKYLGRNRALRVVHLIAQARNAKEGKEGLYGPTMRKAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRFAKGSAGVRAVAGNQALINLANEYGLPQENVSMHRGSSAYAYWAKAGFNPYTHVRLNIGVADNQTGRVNAIYAKAMQQAYNDEARELEDHIRAKLQEAAVPLEKYGVTVQ
Ga0315903_101564133F010835GGAGMNGVALRTERALVDWLAAQDWSASPLGTPACLTSYGHGAFTDLDLEDRMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNAGDSDPSGGFTAFFATPTDFGVNDTSERARTFSRSMRIFAAANSITT
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