Scaffold Ga0315903_10107867

Overview

Basic Information

• Taxon OID: 3300032116
• Scaffold ID: Ga0315903_10107867
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2643
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004837	Metagenome / Metatranscriptome	421	Y
F009318	Metagenome / Metatranscriptome	319	Y
F012449	Metagenome / Metatranscriptome	280	Y
F046907	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315903_101078672	F009318	N/A	MRLILLLLLLTACTNDRPWKVIEVRTKGDACEYVLSRSNGFGPQVKNITAKCGKYTLFQTINP
Ga0315903_101078675	F046907	N/A	MPWIRPQDQMPKDGEPVLITDVLGRQIVAWWRPTHDMWYSENYSWWPREVNYWMPIPEIV
Ga0315903_101078678	F012449	AGG	MDTLIFPLLISSLTALAIAEYHVLPQAWYKTWLGRHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQLTNR
Ga0315903_101078679	F004837	N/A	MTQDEYLLATKHRHYWEQYQASLFMRLSPEAVHDLHTILVAHGRPNTNWWCADCVKSALQYIYSQADQFAEANQQTVTH