Scaffold Ga0315903_10070807

Overview

Basic Information

• Taxon OID: 3300032116
• Scaffold ID: Ga0315903_10070807
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3440
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023831	Metagenome / Metatranscriptome	208	N
F056550	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315903_100708073	F056550	N/A	VRICIVYHQRLGDIIRILPIARHLAGQGHSVYVECLPQYWGLFGCVSYARPSDPKQRHEMRFGRVLELEIWPHRYDEYRASGKPWGDFVFGLFPEFAQLNQRPEFDLIDEQPQLEDYGFSREICLLAPFGYSQGKQHHAGKLMETCRRVAKRPIVFLADEAQEAKLLTWRVPQSMILRAKSPAHLPRIIRDAEEMFTINSSPCIIAGAVRKEFWHVSSGVAQDDAFSPASRVVTVGD
Ga0315903_100708076	F023831	AGAAG	VSTRTNIRNAIGLKLTQAGVVPTANLLKGRNNTLASTSFPSAAVYAVNEQVEVRTLAPSNRTQYRTLQVMVEYFTAEVA