Scaffold Ga0315903_10009862

Overview

Basic Information

• Taxon OID: 3300032116
• Scaffold ID: Ga0315903_10009862
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11482
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F003601	Metagenome / Metatranscriptome	477	Y
F067537	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315903_1000986210	F003601	AGGA	MSNYTDEQLLAMAMANIGEYIHDNLPQYILIEDDPRNEDDYDSWTYGMEVLPHDHTWQHASIDVSVSPSEGAXCN
Ga0315903_1000986215	F001165	N/A	MTTPNTPRIPDSIDIQRLQAMQLVAKMKESAERHGIGFIGGFIAPNGDKFVMTNMDDDDAMTLMPEDLKXHKLLQKKMSLLRVKNT
Ga0315903_100098627	F067537	N/A	MSTKRQFDYKIGDRVAERPKPHGIYTHNQQTRERIAQYRNQRYGEVVGVNYKKNSRGAAQKFLLVKWDHLMSPTEHATMRICPVSELERLTKEVLVPGEXHD