NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315902_10783275

Scaffold Ga0315902_10783275


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_10783275 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)757
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029679Metagenome187Y
F033026Metagenome178N

Sequences

Protein IDFamilyRBSSequence
Ga0315902_107832751F033026AGGAMKKPTYAQLVALVEYLSVPAEYENLPLLDAPKAAIEYCIKNRQSHVFSDSTEFNAEEQLDSVVDHVVELLQEYAYDFDWDQRDRISEVLSENSPA
Ga0315902_107832752F029679N/AKSCKFCKKLYRKRGIYCSQSCASHDKEPTENMRRAMRKVANEYNRTPEAIAKQKQLNTPLASMTVDEFAVPIPTIQTLDDFLEFTEGYDKAEKW

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