NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315902_10650696

Scaffold Ga0315902_10650696


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_10650696 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)871
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F089995Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0315902_106506961F089995N/ADPQKLQFMQLTAKMKESADKHGVGFIGGFVAPDGEVFYMSNMNDEDTQALMPDSLK
Ga0315902_106506962F001120GGAMTKKSIISFDRTIHGVNITEHGIKSVSKAIKLGPFQLTLNANPNGVKGSLSVPGTGLSIPNIKLI
Ga0315902_106506964F001807GGAMTILAIEDTHFTDTHVTVTAVVDEMRLLYRATRFDPEEWAPALCTTTVELDPEEPIPLDEDGFCAYLDHLDPQWQLVD
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