Basic Information | |
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Taxon OID | 3300032093 Open in IMG/M |
Scaffold ID | Ga0315902_10510785 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1042 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F041191 | Metagenome | 160 | Y |
F062749 | Metagenome | 130 | Y |
F102493 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315902_105107852 | F102493 | N/A | METTLTLHWEYEETDTENNIRGGWVLTDITNGDKPIHLSPKLEQLLNEELDPENL |
Ga0315902_105107853 | F062749 | N/A | MKTKLSLILWAAAALFLSCWSVGFAMSGVFYGNSEFITFTLSLCASLVSAVCGAGWMQQWMKK |
Ga0315902_105107854 | F041191 | GGA | MKLFYKPTKLTCEFIVPDIAKSDGVQKVIGFSKGWHHWNSIRLGIRKEEDYCVLYFYAYIKGQRIIQRIGRYAIGEKVSVTLQWGHYIECKANDGYAFRVAPKFSFPIGYMLYPYAEKDG |
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