Scaffold Ga0315902_10287841

Overview

Basic Information

• Taxon OID: 3300032093
• Scaffold ID: Ga0315902_10287841
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1566
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010835	Metagenome / Metatranscriptome	298	N
F023575	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315902_102878412	F023575	N/A	MALSKGLALVYGAKGTIKLYTVGVSNALTEITTGTITTIESYDASHEADVEQIKNSAGEVVAQVSANERISLNITFIPSASTFAQAKLAASLPKVNGYAAIAGSDATTVGGGSIDGDYVYSGGGSVKFTSSGKAMVTITVTKYLDASALTGTAAVFTL
Ga0315902_102878413	F010835	AGGA	MNGVALRTERALVDWLAAQDWSASPLGIPTCLTSYGHGAFADPDLEDQMPDFPRIVVRSSTAVPVHPIDRTCEVDITATLQLSADDTPEYNVLATVAAFEDILQSLFVDDNISELNAGEYNPSGGFVAYFATPTDFGINDTSERARTFSRSMRIFAAANTVTT