Scaffold Ga0315902_10252518

Overview

Basic Information

• Taxon OID: 3300032093
• Scaffold ID: Ga0315902_10252518
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1714
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F036704	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315902_102525181	F008081	N/A	IPKLFLKIFKQILTISRTSIFYAYNLQKKTMEESDILNPFGYGKASKVIDENRKPAEWWWDYLEINDSFAENEFYILFEDGLLVKKGRSKFRTSQYLHGDRFKSFRQQYERV
Ga0315902_102525184	F036704	N/A	MWLEIDVMLSGSTMDWKELGLDVKHEFVRRMVRLEDIAYVQELVHDIQVMYFYDKTSVLIRGEYQRIRDEILHLED
Ga0315902_102525185	F001775	N/A	MDNQQAKTAALSFLIGVIVAVLLFPKREYETVYKTEIKTETDTLFVSSTDTIYVPKNKIKTEVLRDTVLIDFKPQISLFESTFPFEHGSTKVSGEVLGEVLKMTAVNDYTIPVVTNTITETKTETIIQKPKGIYLGAGINSILQPSGKVAYLDNKYLFEYQYSPMQRVHQIGISKKLF