Scaffold Ga0315902_10209023

Overview

Basic Information

• Taxon OID: 3300032093
• Scaffold ID: Ga0315902_10209023
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1948
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F031031	Metagenome	183	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315902_1020902312	F031031	GGAGG	MESKQVSGKQSIHYRNYRRARDKALVRLAHLYPETYKQLLDEQRSFDEQEGKTWIINPDSRLTVGVHTRANNTP
Ga0315902_102090233	F093237	GAGG	MSYKYTLAEAGKMTTQELLNALLAREVAPRTIVGTGYINARQVAIEYLQGEIEKEGEGK
Ga0315902_102090238	F005558	GGAG	MSRDLSWAELAELTHATQVEHFNFCLCEDNEGQENPYADCPKGEGNE