Scaffold Ga0315902_10204339

Overview

Basic Information

• Taxon OID: 3300032093
• Scaffold ID: Ga0315902_10204339
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F010317	Metagenome / Metatranscriptome	305	Y
F019468	Metagenome / Metatranscriptome	229	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315902_102043391	F006181	N/A	VHVIYPDEAVHSFVMDTDMVVSDILERVFAEWNHGSGMESELFIRSKKRSLSVNDVVGVNGKYYLCESFGWKEVTPQFVNELEEEVSNHPNRIQGAWFALSSVMRTRETKNNLELV
Ga0315902_102043392	F019468	N/A	MTIEKTYKLSIKDQSFFLSEEEVTKLYEQCRKALNIDNANPYFPNYPPGVRKFDDDKTKPLNPTTPSIPYPYDTYPWYTPKHPNDTGYPYWTGPTTTCGTINAGEGICVMDTNWQTNLCNTVKSSNDINFISDDMAVHEDNQKWRSSVEQALDKLKENKKV
Ga0315902_102043393	F010317	AGAAGG	MKKIYIEKLAEVPGGLPARSMDEHIMGKPNYDNYSSIPIEYNLEGVLSYDIEVGKSVVVGRTKRNGVEAYGVFSTSTVTEVGNNYFKTKNSVYSYKFL