NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315902_10126626

Scaffold Ga0315902_10126626


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_10126626 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2709
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001900Metagenome / Metatranscriptome620Y
F005586Metagenome / Metatranscriptome395Y
F036123Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0315902_101266261F036123N/ARMTRDNFRYDIMGFTFTKEHPFIAMSNEAAQAIFDKEEGFRLATPREVQEYYN
Ga0315902_101266264F001900GGAMLVQAASGLERMMYANQSGPLKDSTVAQVSAYVYYEAAVISKLTTNAQFKELFTKTMFDQISIDFGNYIDALARSKPKSLHHVYEWKKTGNKAARLFRLNKISEEGLSFRVNYDFLPSRSMVPASTGKRRHMFVNKASVMEEGKPLVIRPKNAERLVFEIDGETVFMPKGKSVTVRRPGGSASTNQFTLAHSRFFSGRLVNESIKRSGFQKVFNSRITKALGVPSNIKKVQYSFSPNLIRSQADAALTASFGGAM
Ga0315902_101266265F005586GGAGGVTANYKLDAMLELRKYLWKELYTRNIFDEEEYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKVGMSYEDNWLICCEQIMFTLYSTSVADINEIRNYMTDEFRRMDESAKDINKWA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.