Scaffold Ga0315902_10083364

Overview

Basic Information

• Taxon OID: 3300032093
• Scaffold ID: Ga0315902_10083364
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3524
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015201	Metagenome / Metatranscriptome	256	Y
F020341	Metagenome	224	Y
F042290	Metagenome / Metatranscriptome	158	Y
F087064	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315902_100833641	F020341	GGA	MTVAVYDVVHPVTQPQIKLMKGFSSTKQHTRSSSYWVAAYAKDNDDEPINIHKKILIYKQGQDKEALMTNYCNSIMKINRNIWEILVHQGPSEIPDSGDQIVIRLSREPFKGCHVLK
Ga0315902_100833642	F042290	N/A	MTLTYRGVKYEQEDRAKADKAWWNLAHRPWLSLTYRNVRYNPFLTGGQIK
Ga0315902_100833643	F015201	GGAGG	MNKALIVYLVDKKKKVARKDMESKHAIKQLEKQTTATF
Ga0315902_100833646	F087064	N/A	MSTKPQHQYTIGERVAERPKAHGIFAVRQEVKDRIQQYRGQRYGTVVGMKIKPNRNGSKRKFLLIKWDHLQTPTEHAQMRICPADQLVKLQAEGYGFQIE