Scaffold Ga0315902_10046997

Overview

Basic Information

• Taxon OID: 3300032093
• Scaffold ID: Ga0315902_10046997
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5011
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F040396	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315902_100469971	F040396	N/A	TLASGTFDPRAGVGSLKGKDKALAVCEVCWIVPDSAPKRDDLALQPGGVVESSVFTSTVP
Ga0315902_100469978	F001215	GAG	VSSTSTNKSPCLIDRPFLRGARITSATPVADPTNPNLTDLVQLVRVGDLPSEDAALVEDIAIVSNEDYPDNSGMRTVDIGFYVYMPNQAAPSTSSALMVGRVEVGLSGSTVGYPQSVQLLATNAPTPQTGNTALAAPIELGKSEGLYLEKGYILCAGYLGQGNAAISGGLSPSGIT