Scaffold Ga0315905_11496218

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_11496218
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 530
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027179	Metagenome	195	Y
F060914	Metagenome	132	N
F103230	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_114962181	F103230	AGGA	MIPLISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKS
Ga0315905_114962182	F060914	N/A	VQQKDTQLKRLIKVRSDISASIFPIQLFQVDDYFTAEEDGVELFRYKSQHLCSIKAKELIRKRKNEKNALIIQNIKELKEQGII
Ga0315905_114962183	F027179	N/A	YEKENSYVVMDQNDNILKELKTSTSCARYILKTLQSRRAAERYAIEEINKSKV