Scaffold Ga0315905_10419611

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10419611
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1252
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030689	Metagenome / Metatranscriptome	184	Y
F074558	Metagenome / Metatranscriptome	119	Y
F090056	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_104196111	F090056	AGG	MAEALELSSANRIRQLAGMPVEPEPLPKPENPPAWSEIKESEDYKTLTYPEQVDLARKWGEETKLYASTLKD
Ga0315905_104196112	F074558	AGGA	MDRVSYGPFKLFESDAYKQAQAMQAEKQSLELEKLQLDLAEKRKDQEMSSPSGRATRAGEIAAFLEQEQQKDVGIPIGEEMASKMVAQGGPSILEATKMQGELDVEARIRQARRDAMMNLAAGEKSLLPTASVDLGGVKQTVLAGQAGKTSADIYGQIYRNQVPQVASTYEAEGYDRDSAIRMASQDVRKELVKASTGGKVVLTGADGLSTISYSNEQAERMWRDPKTPKGIKVQLNNFFGESEEPTASSYIKSRLGR
Ga0315905_104196113	F030689	N/A	ALPGGFNQQASTAAPFYQAVDQQIPVALTQAFNDLYRSQSNYQASTYGAQVGAIASQPSGAQQFGQIATGIGNLFSPFKFTKG