Scaffold Ga0315905_10347421

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10347421
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1409
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011756	Metagenome / Metatranscriptome	287	Y
F065721	Metagenome / Metatranscriptome	127	Y
F075658	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_103474211	F075658	AGGAG	VSNVLELRNGTVKRIIFYEVSDAQNLAIWGGESPSEALKWYRESPLDSKIY
Ga0315905_103474212	F011756	GAGG	MAEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSDCEDKRVMREKESK
Ga0315905_103474215	F065721	AGGAG	MTKYVANENGDWWEVVEGESLYLIDTANPDITKAMEEEDTNPYQDKFEYFIQQYGVKVGLNIKELSNARI