Scaffold Ga0315905_10301836

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10301836
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1536
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013087	Metagenome	274	Y
F039139	Metagenome	164	N
F078705	Metagenome	116	N
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_103018361	F013087	N/A	MEPTVWIYFSKTGTGYELQGTDIISGFDAFIYTAGTYLIEHSFSEIKEEMYFFIYEWDNSQKKRRTIYERNQRQNILLNFAKNVDLVHNVRQAIYQEYMDEEEIENANS
Ga0315905_103018362	F078705	N/A	MYIAVDAIASEDDPKLSYLLFPYDEDLLDAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPVLVNSKLHVANDYFYFSGYRKGTRNDKSNLKYVSGNFNLITIENLRKYVKSKKAMVK
Ga0315905_103018363	F093847	AGAAG	MVFISQSQKDSTLTINLRKTFARVVYFIEQINQGKSKETILKELDLSEDEFQFLLNTMLSFSALKDNEATISSLDISGTVYIGGVYVTINNKDVISL
Ga0315905_103018364	F039139	N/A	MSMFLSAFEFTSEDIVTILRAHDTDITIHQLAELHDILDHDSIVRSALQYNDQDMQLKSALSHAEDLMIMDGLYITEPKRFYVDD