Scaffold Ga0315905_10249242

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10249242
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1724
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023036	Metagenome	211	Y
F039471	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_102492423	F039471	GAGG	MDEFYLIVLARKVNDKSSKLSRVAKCTFDHYSAPGGVVAGRWYSLHIYDSPFRGMLDAVFVGLSSDPGIRAAEALAERMVSGLSLASGVKWEANCGPIDAEDAALLRIELEVLNLFGD
Ga0315905_102492424	F023036	AGGAGG	MTSTVNVNTTQPSDWADLARKAASLEGVELSVFIGLAMVDRSIAVLKLNPAKAWAKLSERKRGRPRYDPAKAPSVKRKRGRSNG