Scaffold Ga0315905_10246502

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10246502
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1736
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030670	Metagenome / Metatranscriptome	184	Y
F034827	Metagenome / Metatranscriptome	173	Y
F048123	Metagenome / Metatranscriptome	148	Y
F078229	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_102465022	F030670	N/A	MKVIRYIKELEDEFGKTLEKWAVYEEIQKPNYPHANFIDAKILKTFPSPYHARNWMENDSKRIN
Ga0315905_102465023	F078229	N/A	MSNITYTYYVEQDKDKDGNYIQSFSIYKTPIVKTIKVNTFKKLKDANDFLEKYESN
Ga0315905_102465024	F034827	N/A	MKYTITSRDQEAMVEFDSLKEGEVFSFFDPESVQRGNHAIYMKIKNGSNNIVNLEDGKVFGFTDKKRNTLNDPDEKQGNRVYKLNAKINIVVL
Ga0315905_102465025	F048123	N/A	MKPRYDLTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYGFSLTNSSNISKIAERMYNFRPF