Scaffold Ga0315905_10216718

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10216718
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1875
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F036669	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_102167185	F001840	N/A	VKEEKESEFLICDCYSHGLLVEKFDDEEVCLSLFERGLSGRTLGWSERLRWCWQILRYGKPWSDFIILNAENQKKLKEFL
Ga0315905_102167186	F036669	N/A	KCFLPMPDEPKGYTGSHGFQTKDFDCSLDIYIIDENGQLFIERRETEWVEGNPNAKGFLDKVGHIKTKKTWLESVNKTCTVQFYDFFSSNKTDYDYWIVYDAVFIDGKIKDIKLTTFEATPNSERKKKDIEFHKKMQEWDEFRKTRRYKYLLNPYNKILKFVCDKVYKALCFLSSRVWRVHNFLMIK