NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10174887

Scaffold Ga0315905_10174887


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10174887 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2127
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051919Metagenome143N
F065438Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_101748871F051919N/AMSNENVIYNPYYGDNLCNLLANSIVEKIKSVDPKLYVNISVTNVNSFFMTCGETEYTEPLDITEIFNSVMENVPEPLKMIVKVFDLISYNTKRVSSTILYTEHFSKYKKTLSENFTKYSEILKLNKKECYTNIKCFNTDVYIETISNVNEVKLPKGYIDWKPNTKVFTSSPIFGKDLNSEKYIYMLFRYIAHTLFESGLCNVVKLSVNTNNPVDQLYWDNVNFEIDSEYFLISKKWTESLILDIFNFEVNKVIEDLNLEVYDFANEILHENENYTWLRNDKLNDIVLV
Ga0315905_101748872F065438N/AMDIEQLIKDGDTEELQTVIKRYFNNDYELFFKYIIDEGYIEMSDDIDDSIYDLYPKNIIKYWMAKNPEKTIDYIIDRHLNDVKKQDGKYYMELPDLSDLKFLFRSDAKNYVESILSNDYDPYHYSFSDFGMELSNLIGDLDTKSKIEMSNYLSKHVGQFVEYNGDDDTISSYVEFDESGDMFKLTQERLEEIMGDDDSIASLLTDSPEFHELGFLLTNAYGDAYSTAERDAYYNKTMDELKDFFETQDLGYWGTKEGYTYDKEGKRIPRMKDIYFVNITKVIKGIIMDTVEHRMSDFDDYNTFEDSGSFEWILKEYYADEIRVNFDRVSPDYGDVDTLFNEYFRDNI
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