Scaffold Ga0315905_10167732

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10167732
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2179
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F015702	Metagenome	252	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_101677323	F001477	AGGAGG	VSNVYTIHPPKSDLILFYEVVEAGGENTWGGADAGQAIQWLAHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVKAASL
Ga0315905_101677324	F015702	AGGAGG	MTIKEVELEYTVYNLVRLSEKVWGENAIEYLAGRLESVITYNQMKALVDRLKEEAGE
Ga0315905_101677325	F000821	GGAG	MNEEYLKAKFDLCISEAEKDLQQEEIARAIKNLERANSALSQLFGFEEETDDN
Ga0315905_101677326	F003212	GAGG	MKEKWLVTLEIETYDGDPKSWNWDNLYIGEEDIKIVSSDFKGRVLPTSEGESNE
Ga0315905_101677327	F083706	AGGAGG	MEHLTPRGWLVVGILIGLSTWGLWEVASHLLWTGNGWEWCESLLECEREGK