NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10145678

Scaffold Ga0315905_10145678


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10145678 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2363
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007163Metagenome / Metatranscriptome356Y
F011276Metagenome292Y
F017266Metagenome241Y
F075746Metagenome118Y
F091317Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_101456782F017266GGAGGMANYYPFHQRLLDGIKAGEIPIIGTGRQMGKSYVNTLLQNWYASMREQYKPKIKWQPLPGLKLQAYTDDVAPRGFERGLNESDMDPVQAWTEECRCGTRMSFNVWKFKNEKQITMFLIKWSE
Ga0315905_101456784F011276N/AMIKGLMGTCGVTVSAGNTALPYVGPNASNPIQGMLRINMTELEVFTGTAWQQLSTSYATVSLDQETQDLLLWAKAQRTMAMNRLTLAQNNPALMKALEAIKRAEDNFELLEKFVEYDEPGAGSVLVGYNFNTP
Ga0315905_101456785F091317GAGGMKVGGIDPAVAHNIELAKLTQQQTIKQQQLKVITDRQEEIKQMRPKDLDKGANIDEMV
Ga0315905_101456786F007163GGAMTLEDLEYIFEYQIDEGTEKLYFMLTDGDRHPVIQRHPADKLAELLPMLDSFQYTGHNVMPRFTK
Ga0315905_101456787F075746AGGAMTIFIPVLFICLNGNCEFMQGKTHYKIEAQCVASLDMQKQHMRNLVKEAEKQGTKGDITILEGTCVDAEIKTTQGRVT
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