NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315905_10054168

Scaffold Ga0315905_10054168


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10054168 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4072
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F007310Metagenome353Y
F048994Metagenome147N
F070110Metagenome123N
F103250Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_100541681F048994GAGMMNLYVNGVCVVSTTVIAGIKHGVRKYNLQGYTMVAAE
Ga0315905_1005416810F001561AGAAGGMQTPEQKLKYLNKTIETLWHGVSDTKDGDYPKIINLYKEVLKINNKDRDAWENMIWLMWSMAVNKKDTAWLLEAEKFAKRYLSLMPNGYRSYEYLGTFYRSMIKDERLAIRYYESAIRWKDAETSTHHSLIALCIKNDDLVKAKDYCLLTLKRYPKDAYATMRLKDLNAR
Ga0315905_100541683F007310N/AMRTVLWNNSERWFNHHHYELLIEDITGFDLKKSLCSETIKYMAKRLSDTKYQRRFKTLYTIYENEYNALVEKFNNQADNNGRIEVNYEKEKVCGRA
Ga0315905_100541685F070110GAGMGGFYLPITPMFLDDFPIVIWFVRKSRNSYLLFDSANQLVMRRDEKRKKEIYQYCADNGIEVQDEF
Ga0315905_100541687F103250AGGAMQKIEIKTQYGWSTAKIGRYTNGHLGIQLFQDGSPLVKISTNLPDTNIDSREFHFNSNDAGTLKDDVLNSGHFEDTGKSDKSGFCEYPVFRLKDHVEVVEG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.