Scaffold Ga0315905_10028446

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10028446
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5671
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F011665	Metagenome / Metatranscriptome	288	Y
F033308	Metagenome	177	Y
F077285	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1002844610	F011665	N/A	MQNQINLSPVTQFVQTLRSAELAQHREIKLTIQQARLLHLALTEILDKVNQDYETLYNDLKRSVGSEVITVEMDGGGFQEPK
Ga0315905_100284462	F077285	AGGAG	MTDDKLQRLYNNFLEFADHMCTENSPMEVAAIMMTQSLTIYKSALSEEEYNQMVDNISASRSKIKTFERPTFQ
Ga0315905_100284463	F002977	AGG	MIVQIPAEGIMQTNDWGDSRVYRISCNCGDENHNHNMWVEADDHDITVTIYTTGKTNYWSKTRWYHIWTLLTKGYIDTESTVCLTKQQALNYAETLKSAIEDVEMFRAERKEKSATVKLAEQGDCA
Ga0315905_100284464	F033308	GGA	MNTAKQLTDELIYRMKTTDLNKFEIKREVGENWLPQGVVPFDLYASKGIATFTVWAESIQDAEHQVSQFLERDEDE