Scaffold Ga0315905_10025992

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10025992
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5940
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F060908	Metagenome / Metatranscriptome	132	Y
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1002599210	F093847	AGAAG	MVFISQSPKDSTLTINLRKTFARVVYFIEQTNQGKSKEIILKELDLSEDEFQFLLNTMLSFSALKDNEATISSLDISGTVYIGGTYVTINNKDVISL
Ga0315905_1002599211	F039139	GGTGG	MSMFLSAFEFTSEDIVTILRAHDTDITIHQLAELHDILDHDSITRSALQYNDSDMQLKSALSHAEDLMIMDGLYITEPKRFYVDD
Ga0315905_1002599212	F060908	N/A	MTRKLDYTISETITTQSKKRIHIPKKYASYIGLNKGFVAHVTNLNGSYVISVCPTPESKKYMVDKDGAVRFPVQKNEYKIMIADSVVVIV