Scaffold Ga0315905_10024127

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10024127
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6173
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034575	Metagenome / Metatranscriptome	174	N
F035304	Metagenome / Metatranscriptome	172	Y
F070104	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1002412710	F034575	GGAGG	VNSTTLDPYLMKLVELGMDGADILHGHLKVLMVEAEAILDRCIEVEEYSEDAMDSMARTEATGYLDALTEVYALTYAIAFAKEDVKNRKEILGG
Ga0315905_100241276	F070104	AGGAG	MLGYTETDIAVMTDAMEDAIKSGRLSSEVTDGLEKAQSFLDGLWAEGYFD
Ga0315905_100241279	F035304	N/A	MDLNTFREYIRLHSISLEQDLENEDGADSIVPYLEGAIHVSKHYLEVVSE