Scaffold Ga0315905_10021565

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10021565
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6527
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043833	Metagenome / Metatranscriptome	155	Y
F050892	Metagenome / Metatranscriptome	144	Y
F100355	Metagenome / Metatranscriptome	102	Y
F102508	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1002156510	F050892	GGA	MITDPRHRELLQQAIDVQTVVADELQAAYNARMALPIENPNRLETKSLWRDSRALEALISGAHNLLTGNAGVVTLQGRS
Ga0315905_1002156512	F043833	N/A	MTSPNATLLLEIDAAIAAYSASIDRSLALAGEMRQLADAVDGGMADARAEFEEWW
Ga0315905_100215657	F102508	N/A	MNRPSDRVSLAEFLDIKRLDATMYHLGGVRVAWRAMAKPQRIDALKVAALSLSNISDRQLPAGQRRARRQNAEFENCILMGVLALIASTLAYTVGVEQGRARCPLGSAPTVVQ
Ga0315905_100215658	F100355	GAG	MSKPIPKRRPGPGTRVSGAIYDAAGNSVVVDAYLPADAYEQVKRLQGQTGDTQAGAFRSLIFRGAKYLGFCDSVSAMYAVAAANGGASDAKAVHHLIRLGAGLNPIFSNPPTP