Scaffold Ga0315905_10017932

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10017932
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7166
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F003965	Metagenome / Metatranscriptome	459	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F017133	Metagenome / Metatranscriptome	242	Y
F045756	Metagenome	152	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1001793212	F000447	GAGG	MGYIEIFRIDDEGAGWVDLSDATPQELIDLEIGLFQEGAI
Ga0315905_1001793213	F007263	AGG	MLNIIDKTDFYEISDEQHFCCDESQFKYYCEEHLEFMGCYFCGFDYSKNCEDQH
Ga0315905_100179322	F000684	AGG	MTLSGYTYQIGDLFTTSKTGVTGRIKDFTPINAKLTRVSLQLANGAHRFAMVKTSK
Ga0315905_1001793220	F017133	AGGAGG	MSIWTKFATVNDYPKGMMNLCPCGQVVLAPALYHEGKPYWENPNKCKELFEGVNK
Ga0315905_1001793221	F045756	AGGAG	MTKYNVLISYVVEAEDEMRAVFALNKTLYPLSENEIAKFDPFLVEEVSQ
Ga0315905_1001793222	F003965	AGGA	MTSLTIIEVCKTHTPNKSAISMVGDDQFTFCEICENNIERWYNDTDPERLPMWTDWKVSQ
Ga0315905_1001793225	F093845	AGGAG	MIKVTLTTTTGATKGMSFDTKQNVLDFIQKMGDTLPVGTALNIDAPLIGIHSGWIQGKKMANSL
Ga0315905_100179328	F004840	AGGAGG	MEYEYVITSAYDSNAPHWTQRYENEFGAWESFFRFTDWGMANEYRTVNLYTPTGKCYTKLFYRNGEVQVKA