Scaffold Ga0315905_10012879

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10012879
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8469
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F006539	Metagenome / Metatranscriptome	370	Y
F016265	Metagenome / Metatranscriptome	248	Y
F028508	Metagenome / Metatranscriptome	191	Y
F046377	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1001287911	F000468	GAG	MTAWSPDWKLTVAGVDYTDIAISDIQHQAGRSDIYQQPSPSYIQVSFVALSGQTLPFDINDSLSLQVKNSAGTYVNIFGGDITDLTVSVGATGGIASVVEYSILAMGSLVKLAKELYSGTISQDEDGNQIYDLLSSVLLGTWNDVPAASTWATYDATETWANAQNLGLGEIDTPGLYTMENRAAEVDTIYNIASLIANSAFAYLYETNNGDIGYADADHRQNYLLTNGYVDLDARHALSQGLSTITRSGDIRNDVYINYGNNFGSQKTATSATSIATYGYKAESINSVLHSAVDAQAVADRYIAQRAFPQPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPAQISGGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPITEAWNTLSPTLTWEYATIVA
Ga0315905_1001287917	F016265	N/A	TGCGSPYNGTRTILAENLGQYTFSAAITNADIIEANVIPSGVATLSGASTYVGNAAVESAVYTVSVNVFQARLSSGGQIEGVDFAVTPFKMGRSLFNTCVGLLGSYMDTESMCQ
Ga0315905_100128792	F006539	N/A	LPLTQETGERMIETTTGWLVLYSVLGYLIVWGIHSTIKENYGQTMYWRGRKHGYDMHRRITDAKRDQVFDYDKQN
Ga0315905_100128793	F046377	GGA	MKIQIDLKAADFEQLWINSMEWMNNDWQKQADRFDPSPLFSWGYAYWFDNYAALKMAEGFLSSLGKNYATHSDENTGDWVILTNYASPCHLRKKLVNA
Ga0315905_100128799	F028508	GGAG	MTKPMVRIHNTETDEVIDREMTAAELKIYETEKKYIADKIVEVETKAAKKQAILDRIGLTADELKTILG