NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10012692

Scaffold Ga0315905_10012692


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10012692 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8541
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001796Metagenome / Metatranscriptome633Y
F033645Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_1001269215F001796N/AMTQWNPVWKVELDGVEYTSAVLANLSISSGRSNIYEQAQAGYCNIQLIDLNQIAIPVNINSTIGVSIKNTANTFVPIFGGNVVDIGLEVRDVGSTAFTQTYSITAVGALARLPKALTNGVLATDFDGDQIYEILRAVLLNTWAEVAGAVTWGNYTPASTTWANAENNGLGEIDRPGEYELAHRSSERIDVYSLVSALATSGLGYIYEDALGRISYADATHRSQYLAANNQPVTRRQSTIMEPLHKSSRQHCTIQLTHWRRQIFICHFAKTLKQILRRSRTT
Ga0315905_100126922F000403AGGMADFVEIIYPQSMTAKLLENGVVVAEYKIEQCDKCSALSKFDPFGFQTGYDKYEKVIWFCAVCR
Ga0315905_100126923F033645GGAMGFLDNYEDVAARIKRFWETHPSGRIENNIIEFNAEKGFILVQTQIFKEYEDSKPSAIDYAFGNVATYNVQMKKFFVEDTVTSSIGRAIGLLLGTDKRPTLQDMEKVETISTKVAQSTADDYDPWTKKFGEVASYATAAEAEQSGVPSFGSSLDEIAKQLGGTLVQEAPQCSHGHMVWKKSHEGAPKTWAGYFCTERTKATQCNPRWYVLASDGKFKPQV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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