Scaffold Ga0315905_10012155

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10012155
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8727
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F008237	Metagenome	336	Y
F009530	Metagenome / Metatranscriptome	316	Y
F020863	Metagenome	221	Y
F046323	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1001215513	F020863	AGGAG	MQTTTEDLHRLVGILEELVKPLLEGEEMPEAYESMKRPHLVLQAGSKTYGRAYRIHFTGGTKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGLMIAERDN
Ga0315905_1001215516	F009530	N/A	MKITYSIWQGSRLLSIDNIATDPKEIDQLIHTLNESELGRKVKFSVNIQQIKVGN
Ga0315905_100121553	F001515	GGA	MASKSSFDLDFGFGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECYFKKIEDWAPSGLGVTEAAYWAFVLEESTLIVPTAALRWCVKEFGREITCNIQPNISKGYLITVDDLMSATRLYKKATAVSE
Ga0315905_100121554	F008237	N/A	MTLEWARIEPWQYVVDSVASEYHRKFSDIELEDIRQSLYQWFLEHPNKLDTWEAIGVKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLTPVLRGEWGQINKVDLGRPGKPSAPNEGGNMMAMMIEIDFAYWKLTKDDRKLLFLRHAEAMDFPDIAKELELGSEDAARMRHKRGIRKLINKIGGFKPYSDHDFDSVQQVQQQSSEA
Ga0315905_100121559	F046323	GGAG	VTQHFEVVYETKGVKVVNVWLAPEQQLPEQWNIMTHTEKDEWLYEHQVHSNIKWQDEYKGEAVNVLPVAQLKAVM