Scaffold Ga0315905_10009404

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10009404
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9893
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000940412	F001808	N/A	MKYLVIILLLSSCSAQYHLNKAIKKGYTCEETGDTIRIMSVDSVPIIINDTIVWEKFITTKDTIIKYNTVYVPKTRQEKRIEYKLKIKTIYKDRIVEKAQAKATRPRTRGNLNLLFVGIGIGLLLSYFFKFAREKYLW
Ga0315905_100094045	F003299	N/A	MCQLKMIQMKRYKVVFKTFDYWNGPVKLVTRIIEAYDADHVKQLIQKNDDLIMLIEEV
Ga0315905_100094046	F003327	GAG	MINEFTQLAREVQDIIANGEYTHQKYLKFRQWYFQSYEGSKRNANRDFKMFDLMYGLDVPIKNDTNEEI