Scaffold Ga0315905_10006652

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10006652
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11753
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y
F045753	Metagenome / Metatranscriptome	152	Y
F049635	Metagenome / Metatranscriptome	146	N
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000665213	F012871	AGG	MYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFELNAANELTKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEEKSELIKENEMAVNDDSWRRMLKEDIESFKQGKYTTLELRGVSMMRWLEESKRITAETFTDEEYNLCKAKARKTVYFEQQLNKPMVERMSDRKRQLLKESISFEGFRELYKLYLSKQ
Ga0315905_1000665216	F019140	N/A	MKNTPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMTKPNEENGREQN
Ga0315905_1000665218	F021113	AGGA	MNRNILAAILLFLGTSLLWLVLCWNWWGKKDANNTITEVQKQDSIINYNAGEYQMLLEEQLELQEQIAYYENAQSSAKATYQRTRNSLIVRDTIIRVDVIRLVNSCDSVIASDSLVIDNLKEQLNIEERKIDNLQETVVAYEQKEQLLTEEINSLTADNKKLDKQKKRRNHALIVTTSVAILSTFVLSILL
Ga0315905_1000665220	F039140	N/A	MNEKLKLWVKELVSSSKKVSSKRIIGIFVVINLIAFSYVATFTTYIIPIAMFDTLAILSGGLFGGTVIERFTNQKSNDKTTDSSETNSTGNVQ
Ga0315905_1000665221	F027518	N/A	MNAETEIALIHEELQNMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQLILKFL
Ga0315905_100066526	F045753	N/A	MYCPKITYCFSDEDISALNERIKAIANNYNDDQTGWFEVNEEQHLTFIDEQDNMYSINLRGRFHKNDDPDFELDYVTLEKDGVSFSFDLDIFDDHL
Ga0315905_100066528	F071250	N/A	MKKLVTLEKRVENLLKKYKFLRNNNKALCVKVWEQQFDERKDITSNFFAMYELGKYVSADNITRIARLVKQHNPELRGTNHEDNKKKEQLIKPLLKR
Ga0315905_100066529	F049635	N/A	MNKAIYKTPFGRLVKSQFKTMNNFKTVLRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND