Scaffold Ga0315905

Basic Information
Taxon OID	3300032092 Open in IMG/M
Scaffold ID	Ga0315905_10005215 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032092 Open in IMG/M

Scaffold ID

Ga0315905_10005215 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13250
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13250

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.8268	Long. (^o)	-83.1913	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.8268

Long. (^o)

-83.1913

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023350	Metagenome / Metatranscriptome	210	N
F028175	Metagenome / Metatranscriptome	192	Y
F046371	Metagenome / Metatranscriptome	151	N
F071242	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000521510	F046371	N/A	MSENKLNFLRSQIAMFHPEWTKEQIEMEAIRIHNEANTIDDDDEGCLYCGS
Ga0315905_1000521515	F023350	N/A	VTLDQYIEGNYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYKQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKK
Ga0315905_100052152	F071242	N/A	MGATSKEQVQNKANAMVACLEFIKLNVKSNSEYGRIANGKRKLKLWKHYAWKVTRISVNVAFWIFILYKLLS
Ga0315905_100052154	F028175	N/A	MAITIEDQPYEYTPVGQRLIIVCKSNNVNNAGFRFVFDFGAFQVNVQPNASNKGMLDLAPIFREKLKHDEGASNESMNEEVRSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVFPFLAEYQVSDGYKPNPNDRYALSNTSKYLLSERTNETHKWIEAPTRGLSNDWVYIPTRLADFGQLYSISNNGLLVDNLATDLFVATYDDTDTIIETRNYTLATENRSVSRLGAYPANLITDGLDFTNVKYYTIQAGESIAPPIYTAVSRVYCFYLVPDDCRFDNVRLGWTNTVGGIDYFNFTKKSELSFNYDRKQYQKVVGSYNTASFTFNTWDRGTTDRYVTTTKGLQINSDWISVGEFELLQTLCRSNDVFIINDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315905_10005215

Overview

Ecosystem & Geography

Associated Families

Sequences