Scaffold Ga0315905_10002278

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10002278
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20204
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (21.74%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016262	Metagenome / Metatranscriptome	248	Y
F019993	Metagenome / Metatranscriptome	226	Y
F021092	Metagenome / Metatranscriptome	220	N
F025232	Metagenome / Metatranscriptome	202	Y
F028461	Metagenome	191	N
F054033	Metagenome / Metatranscriptome	140	Y
F088542	Metagenome	109	N
F095365	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000227816	F021092	N/A	MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGVEKMRKFLSKNTGFHRIKLYTNNDLKTNGVPRQEPQTFEVSITGKEFDPPKQDSEPITGFGVNPSYPSAGGIIGVEQYLSKHEENATLREKIKGLELEIQYLRDQHNREIERLRSDHEQALKAAKDSNQMFSQGLGMLMQRMGVGE
Ga0315905_1000227820	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLIGTGAAGKLIADLSPIAVGLLLQGQSNIFAKEAGKGMIAQAAGGFIKGQFPALGIAGDGNYMGEGTMMSGLDTGVDNPMISAVPSDSSYVAPSIGAAYYDDGSEAAY
Ga0315905_1000227821	F095365	N/A	MEKYILQAYEFYRQDVTTNYLSYEQFKKQLCKPTTPWWVYVAGGAAVGYSLKK
Ga0315905_1000227824	F019993	N/A	LLLINFVEMKREVKLLLVAGIGYLGFKAYQIYTALKQLSYAPTGINFSIIKERGAIGGTLFVDIINPTAATIKVDGFTGTVTTTNGTLIGDYKGTALVLKPGSNNVRISWGSRATTTLIPLALGIFKGNWPVLKFNTVMNVKGFPIPTSFTLNTKDYKPTLV
Ga0315905_1000227830	F025232	N/A	MENVNEKILEDYRLVVARLDLMKAEIDEVNRANNKMRKAFIELLEAHQLELDQRDNHFYDRQETDYYWLDKAGILD
Ga0315905_1000227833	F054033	N/A	MITIVVHDKQWFIDRIGKRIYRKNNICNCPTCLQVHEIGLIITDRDHAIYLYDCQEMDLIYYEK
Ga0315905_1000227837	F028461	N/A	MKKQNAATMFKNPQLQESIIRQYKEAGLDFTVKHSNYNTQIIGQESVLKFVQTEHSIRVFIAYNKIVKDLKASERTIEILQGEWSTENFDSKNGLKPCKLNSVLNLDITSAYPYCLFINKLITLDTFNYLMQLPKNERLPAIGMIAKKSVWIEYKKGDASSWELKEGEYANIFFFVINQITDLMAWAAEIAGSDFLFYWVDGIFLRPGIKKAKLNEITRIFAEQGYYYKYENVKDFSVVRDGDKLFINMIKNGEEKPYTMYDKNLARNFTKILQAIENEQNTLHVSGATA
Ga0315905_1000227838	F088542	N/A	MAKKKSTVQYKDRKYNYPKGFTKYGKAKTGFMPAAQGARVFVENNLEKIKKGTIPYDSLTQREKRVYRGKTSNTFANTFTFKDKRYYDPTGFLRKALDNDPALKGKRDLTNLLPEAGFKDYFDQRINPTKGTKKLTDKERSKWLEFSSSLYDFNKGEKTQFYRDESGSLMDIVTKLNKARKQGREIRVIDTDGSIKVGVKAIDRMRAFEAEKLKEFTDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNKTP