Scaffold Ga0315905_10001708

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10001708
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23437
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.67%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F008815	Metagenome / Metatranscriptome	327	Y
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F038230	Metagenome	166	N
F052594	Metagenome / Metatranscriptome	142	N
F054865	Metagenome / Metatranscriptome	139	N
F090393	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000170811	F008078	N/A	MKQTPKEKAKELFDHYYILIQEIGGELGQEILVSILAKHCALFAAREVLQDKWNTEDYDQYHYWEEVQHEIENYEE
Ga0315905_1000170812	F038230	N/A	MKNKQNRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMSREERQKYIEYQRTYHKLKQFTNE
Ga0315905_1000170813	F003786	N/A	MSNLTQYQPRNSDEQAIISARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQKDMEERGRVEREKLYAEFPNMIKDFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLMTIRSHAKKIEHGNMKRAVVIAQKLAVWRKVIKK
Ga0315905_1000170816	F019647	AGAAG	MKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEQQTMPVQTEQSEKPDLAAMVFEMSAIYSQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR
Ga0315905_1000170817	F090393	N/A	MALDRKTSCRVSFYDHEQEQIQSWAITGSARLALLINTISHEKNKIETYKDEFQSSLDYLIHDLKKFLETPYTTEDNA
Ga0315905_1000170819	F002778	N/A	VKEYNAQMIEIKAFCDEVNAWISTAPSAEHLEECDDYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRSVKQLLLITSDNYRTLLSSFRQERILVGHMTT
Ga0315905_1000170822	F054865	N/A	MEAKTNRFIIKYREGIVSVAAKDVAEAIEKFKELRIETCAKELTIVPEDEMYKRREEIFRKE
Ga0315905_1000170823	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQTTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRKVVREVTKTNISSTQPIKFTMAVCFILTVAYLPAQNNHFFAYNTMSLEKIDKGLLERRYYSEANESYTIDTITYDLLSGINLWDGYSRTTYDNTMFMTYGTQNFEYFPLAGIWKYNNKYYDYIGLLKFVSKYVKRNFLNKKINYGKIRRH
Ga0315905_1000170826	F052594	AGG	MAAKTYGLDKKQIALCDAMIAKYPKGIRTNNVVSSASTLVSFYNSKDENNKQFYQYMNPERMVSLLWQVVKINNEKEDVKEAAVRMLNKLLQDIVVN
Ga0315905_1000170832	F008815	N/A	MPNYTERTVLSKPRDFAEVANNAGSGGVVNNNVTETINNVTVNGSAVSIFNQEFLNTTSAILTWTQNSGKLPTTNLLAAIHVYQNGQKLLDSQYSITLPATITIDSNTHYDGSNYIVFAININ