Scaffold Ga0315905_10001056

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10001056
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29970
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (80.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F005294	Metagenome	405	Y
F043830	Metagenome	155	N
F082375	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000105613	F000220	GGA	MSEEKPADVLSKVLSYVDSPFKLFALILMAVFAFSGYFVWQNQAFLFEAYKENKKLPMIAEDRAEDVVAHLFKNTDATVVAIFKVNPLFGTRVLFRAYTREGRDKTHDGLDVGLFTQSSANNRDVIALMANEIPCSEYAVAQSEIGLWYIEKGVTFGCRVSVPPEQGRFVGQITVGWDKEPKDITKAISMLQIASTMLSKSKQ
Ga0315905_1000105619	F005294	GGAG	VASNPLNVALVYDPRYHTFESWASLMCELYATQQLAIPNALTDWREWASGLKAIDVFNNEAVPGPYIFDDWQEWAQQVVNAVNPSVN
Ga0315905_1000105624	F082375	GAG	MTPKQFVNELFGEDWKPSQLPVLLEKLKVWSEDAQRYYVLRDFVKSEFNENPRDRKECHEFDDLVDAKRFEQEL
Ga0315905_1000105625	F043830	AGG	MVVSMNPYLNTNEIKEAFRKIYLEENYDFLEEDLIKLADGFIMAAMPAIVKTERDMCVKFVNSLNTNVARALGEYRENL