NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10001033

Scaffold Ga0315905_10001033


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10001033 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30333
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (84.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045609Metagenome152Y
F056310Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_1000103321F045609GGAGVNDRQQANRLLDQHKEARQLSYADTTAALRLTGDYEDDGSAGVGSEIPQESERPWENQSIGMVVAGLLRYREAAWNSGSQRFTQENE
Ga0315905_1000103339F056310GAGGMTIYIPLLYICIAMECKFFQSEIYTLDKQKCEQEIAQQKIEITKQGNTVEAICIDMEIKLEKKQDKYNVIY

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