Scaffold Ga0315905_10000747

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10000747
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35449
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (75.93%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003962	Metagenome / Metatranscriptome	459	Y
F004010	Metagenome / Metatranscriptome	457	Y
F004760	Metagenome / Metatranscriptome	424	N
F007467	Metagenome / Metatranscriptome	350	Y
F010449	Metagenome / Metatranscriptome	303	N
F022371	Metagenome / Metatranscriptome	214	Y
F045608	Metagenome	152	N
F090072	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000074710	F010449	GGA	MGTDDQIGDLRERLARMEERQLSLYKMVETSLSNYADVVNRISSLEHLRTKALAIAGVVGLVCSMAWDVLKNRFNS
Ga0315905_1000074714	F004760	AGGA	MPIYQYTDTRNGSVVELEKSVANRDSVPKHLKRFTFPQRLAVFGAGESPSDPRLSSTSTIMKGYYKQEQKLGSRFKSSFSADQVKRAWSRKGD
Ga0315905_1000074718	F001459	N/A	MRKIKAILAFIRNQAWVNEPKWSSEDEKAWTGFLGTPTGKRLSLILLNLTLRNNASATEKNNAELAEACGYARGFRGCVAVLESLATAKLNSAIQDGMDGSDETAVN
Ga0315905_1000074729	F090072	AGGA	MTEDEIIKAYLSRLGRKGGSVKGPQKVRPREHYQKAVNIRWAKYRERQQTEAQPPKR
Ga0315905_1000074731	F003962	N/A	MEDDEGQEGRVLNQDREQLKLANKFIGLLQKENAQLHSVLRLLGQLVDDMNANCSFEVFEHQWQGLTDEVKRLSGFFETHQKALQSLHDACPETFDTNEVDES
Ga0315905_1000074738	F002826	AGG	MQVEAKDRLKWAREILLIARNKLAVERDRATHGHAIDIIQIITMVDAASLVCKEVVGEE
Ga0315905_1000074739	F004010	AGGAGG	MPLGKDVSKNMSELAADNRKKGKERGAGGKPRSREQMIAIALSAAGKSKPRKFRMRSGS
Ga0315905_1000074742	F022371	AGGA	MFCLLDLGTIVWVISSFILYSSLLLSAIYCAGYIIFKLIDYIRKELDL
Ga0315905_1000074746	F002009	AGGA	MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLLKDRPIHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRCLFTLAQIKKEVTRL
Ga0315905_100007475	F002149	GAG	MTAIEYIEESGVPEAMWPNLAEWFNWFEKQGMVGIVRDEEGIAGVALARCIKDGQKADHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLAERFGPRKRITFNRSGKPRSYDYMTFMRKALL
Ga0315905_1000074750	F007467	N/A	VNEKEAWVKFEEGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISKANKTWRN
Ga0315905_1000074754	F045608	N/A	DQSLDVISYVLRQNEPATVSQIRRIGYALSGQPDTSVSRYGRIYKPSEELSALFGIRPQSINVSKALESKASRFNTDMADVGRIFTETYGAVGNVPEAKVREQFDKMQNRRRVMFDEANKDFHAAMLLGLSRSEAISAMRAGGMGVDNASAIANNRYRDYKISKSLTKSMRRELSPEEMQKRQEIGRELMMQQGE
Ga0315905_100007477	F000635	GGAGG	LTLTEIAQYAGEKVGKTDSDTLTFLQKSASLNYRRVWNFAPWRETVTNSTYTLATNTRTVSLGSLVENPLSIAYDNSELQPMDLATIVSQDSSLLNLDTTGTPSFYYFKGRNSGGTAQVDVYPTLQTSSTAVLQVIEKLQCITRNSYTVDFPPSTNSLNDELRLPHVNHVVLSLTHADALERERQYGKAQVVTQAANADLAAMANYELSQVGGMKQITPNSLGELTIEEII