Scaffold Ga0315905_10000447

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10000447
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45274
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (41.89%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F003748	Metagenome / Metatranscriptome	470	Y
F004232	Metagenome / Metatranscriptome	447	Y
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N
F071018	Metagenome	122	N
F077447	Metagenome / Metatranscriptome	117	N
F094883	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000044727	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFNTTSIEPTSAEEWSAITLASGNPGDNGGACNVTYSEVPVGFNSVTWSPERFALKGPLLCKDDLTYDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPFEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKFNVDCDDPLEKKGQHYAEFVHAAEPIFTNQGMTIIFRRCTGALTQIICS
Ga0315905_100004474	F003748	N/A	MFTVNRRDAGGRYIDAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRMINQENVWFRVNQLVAATKHNVPDGTEYDFLGVKGSYAAFLKSMTGLELLITARFEEYMVNGETKKTLRIKNMREVPITEVDSDDLDPKPF
Ga0315905_1000044749	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGFSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQNLSASPNLENPSNILDGWMVQAENFVVIQDGQSTPLIFNGSNLRRATIDEIKCGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLVFTPRYVFSIQAPVDRDTWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEILNIAENDQASLLWSGSAVVFDNRLLMTAQPRYNAEGVIHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGDKFDNNIADGKKEIQWLVHTRAYNFEIPFGLKRLDSGDIFIDSLDGDASFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTVTGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLDACDVNPFTYTSE
Ga0315905_1000044751	F005740	GAG	MKLIVQDIRSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGENNGGCVGKQLVDRGTVVSYRDMSGGTNSYIRVYPGDASDVGKTIILQGVDASGNWIRTLSGGVWIDGEKLTLALPYVQSTKKFISLTGVIRQATNTSSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNEEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0315905_1000044752	F094883	N/A	MAIGAAILGGAGISAVGSLLGGLFGGKKPKVPELKPIDFAAEQKQAIQQNIASLESATDLATKTTAAEQSQLEAQLRRAIPGYDQLIQQAGKNIGSALRGEVSQDVASQLQRSSAGRALSGGYGAGSGVGRNLAARDFGLTSMQIQNQGLAQAQNFIQQQRTFGMAQPFSVSSMFITPSQRIGALQEQQSRMYGRDLTAAQVAAAPSPMAQAAQTAFTNFGGTVGGALSQYGLSSALMSDYSNMMRQTPQIDVPNLMAPPPSMSAPSVRFGP
Ga0315905_1000044759	F077447	AGGA	VQVEVISDDVEIRIGEMKWVGIAYTRDGKPKVYVRTKAEFEAKFTPVIEQAP
Ga0315905_1000044763	F004232	N/A	MKSNQTIVAVDPGVGGGFAVSTSEGILLFPMPDSLTDTAQLLAGFKVADSHLWVEKVPKFVSKLTSSASMATLHENYGIVQGLGYAQGYALHRVEPKIWQEPLGLGGRKSCETGPEWKRKLKSKAQELYPNLDVTLKNCDALLILHYAMGGGR
Ga0315905_1000044771	F001259	AGGAGG	MRDCAFIYVNKSNGLVRVESIDTAQNVDQSPEWNHVATINPHVVLESILRATIKDRNLIIKHLLK
Ga0315905_100004479	F071018	GGAG	MPPLHHDADPNRSQVLAYIGENLGCDIGRSIRAFNSMRHPKSKVLVFDQVHRMWKGCDWLPSDENSKDAMILVEHRALERRVIAMDGELRKALKEIKRLNKQMADLYSDAETMEEAAEEAESDAKPQRNRRQSRPISSIESMVARAWA