Scaffold Ga0315905_10000264

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10000264
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56587
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (85.90%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F002420	Metagenome / Metatranscriptome	560	Y
F008303	Metagenome / Metatranscriptome	335	Y
F009203	Metagenome / Metatranscriptome	321	Y
F028085	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000026416	F009203	AGG	MTEHTDTAKNVLDVVAVFTTLGTFLNLLTPVFGLIGAIVGAMRIYEMATGKDFSTLFRKKKDDDAEHE
Ga0315905_1000026452	F028085	GGAGG	MLEMIAGILVMTAMLALGAILFVFVCAMIGWMVFITQNGGDDD
Ga0315905_1000026454	F002420	AGGAG	MTFRETTIKYIKDILRPKTIYEVIYAELQEAHLRKLEAETAAEYADATIGYNSRRIERLKQRLFEHAEEDA
Ga0315905_1000026455	F008303	AGGAGG	MIDKLILSAVLGTVGFNGLFPDPPQPITPWQLQQKAKKKSISAMCDRKPKSKTAKDLCRRWRKLNA
Ga0315905_1000026470	F000843	N/A	MPLHHVHPNHLPVVWPVALPLLKKAMDLEPGSHNEQFIEYSIRTGKTHLLVWEEPGEGITGACTIEFIDYPMERVGHVNLMGGKGVVRDYVFDEAKEFMRLNGAKKAQCWARGSLVEMYKKMGMENTHQVMRIEL