Scaffold Ga0315905_10000248

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10000248
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58673
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (21.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008165	Metagenome / Metatranscriptome	338	Y
F016965	Metagenome / Metatranscriptome	243	Y
F044445	Metagenome / Metatranscriptome	154	Y
F050993	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_100002482	F050993	N/A	MRVIRINTTAWAEEDFYLVTTLDDDQIAEVIQPIVNAERDGYEEYDNDTLVKAIKDRFPLEYSDMYTEFHKLKF
Ga0315905_1000024831	F016965	N/A	MLNTFTYNGIEYTITGPIEVISDTQLHVETDKGIILVDNTMDIYEEMLKLIN
Ga0315905_1000024869	F044445	N/A	MKQIVYNSVTCLECNNTIVSHHRHDYVVCECPNNAVVDGGTAYLRYGAKDMSKIKLFTLYTDDDFMILRKHATRGSRGKDGDQPLTWIPISDMDDDYLEAVLDYGGPDWQLDLIRKEIDYRSSLLLKKLEY
Ga0315905_1000024872	F008165	GGAG	MKDNKYIGAWDLEVDGKYVPRTVTIESIYQDTFVGEMGKEDKVFIKLKEFDKAMVCNRSNFKRLETFFNSFDPEDYMGKEIVLTTEKVKSPQGLVDALRFSTRPIPKKELPSLTEEQMAKAIDAVTSGRTTVDKIQKQYKLSEDQLKMLTND