Basic Information | |
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Taxon OID | 3300032080 Open in IMG/M |
Scaffold ID | Ga0326721_10150795 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1179 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Marine Airborne Microbial Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 36.36 | Long. (o) | -97.29 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000367 | Metagenome / Metatranscriptome | 1226 | Y |
F090048 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326721_101507952 | F090048 | GGAG | VTDEAGHCSLCGATSGPFAKVEGLVTVWICIPCLEVRQARPATRLGLHDPGPFPAMTRVQMREHLALLPSWALAQKAAANRQLIAVMRQRLAAGEQVARIYQEPGLGWLERQAEAAEDLLAQRQAEGHRE |
Ga0326721_101507953 | F000367 | N/A | STLPGMQAWEANDPTLTRPIAAPLEQCAELLGFDLDAIQKAAAYVEPYVRVDGTKVWSLMQLERQLRPDAYGRVRGGYIARRRPPTTGAGSR |
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