Scaffold Ga0326721_10093458

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326721_10093458

Scaffold Ga0326721_10093458

Overview

Basic Information
Taxon OID	3300032080 Open in IMG/M
Scaffold ID	Ga0326721_10093458 Open in IMG/M
Source Dataset Name	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1422
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Marine Airborne Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	36.36	Long. (^o)	-97.29	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020991	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326721_100934582	F020991	AGGGGG	VDEPEGSGEPQGGAPVNREGSGEPQGGAPVDEAMRRRVSLAVRAGEAVTDPADAPAAVELARLAQRRLQDRVLPSALRISAGVTLVWLVLVALPVTLGTGVHPAALAAGAGVGMLLFSVILVLGRRQLRLARRAEQRNLRLLEGEER

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